In the middle of a soap, so I won't look anything up.
Do nothing, at least as far as the feds are concerned (your question wasn't clear).
You paid CA tax in 2011 but took the standard deduction on your 2011 federal return.
You got a refund from CA in 2012 of some of your 2011 CA tax paid. None of that is taxable on your federal return as you didn't deduct it and got no benefit.
You then paid CA some tax in 2012. It doesn't matter if it is for 2009, 2010, 2011, or 2012. It's tax paid to a state, and you can deduct it on your federal return.
I don't know if that is your question, but I hear my soap calling.